Members

Faculty members

Yann Ponty

CNRS Researcher (DR)

Sebastian Will

Full Prof. at Ecole Polytechnique

Sarah J. Berkemer

Asst Prof. at Ecole Polytechnique

Administrative Assistant

Fanny Sabatier

PhD Students

Mostafa Elraies

Transcriptionally Engineered Addressable RNA Solvent droplets as generalised synthetic organelle

Co-supervised with Ariel Lindner (SEED, Université de Paris)

Taher Yacoub

Fragment-based docking for ssRNA-protein complexes

Co-supervised with Fabrice Leclerc (I2BC@Univ. Paris Saclay)

Alan Azede

RNA structurome dynamics in staphylococcus aureus

Co-supervised with Philippe Bouloc (I2BC@Univ. Paris Saclay)

Théo Boury

Parameterized complexity for RNA design and kinetics

Co-supervised with Laurent Bulteau (LIGM@Univ. Gustave Eiffel)

Nan Pan

Algorithms for the Integrative Modeling
of Viral RNA Architectures

Alumni

Former faculty members and staff

Mireille Régnier

Inria Research Director (DR) – AMIBio founder and former lead (2009/16)

Now director of Inria Lille Nord-Europe research center

Philippe Chassignet

Prof. at Ecole Polytechnique

Evelyne Rayssac

Former AMIBio administrator

Ecole Polytechnique

Julie Bernauer – Former Inria Researcher (CR) – Now at nVidia, USA

Former postdoctoral fellows

• Olga Berillo – Research associate@ Lady Davis Institute, Canada
• Rasmus Fonseca – R&D developper@zoox.com
• Loic Paulevé – CNRS Researcher@LABRI, Bordeaux
• Balaji Raman – Associate professor@IIIT Sri City, India
• Christelle Rovetta – Data Scientist@Fujitsu France
• Saad Sheikh – Tech lead@Facebook, USA

Former PhD candidates

Bertrand Marchand – PhD 2023

Exact parameterized algorithmics for structural RNA bioinformatics

Now postdoc at Univ. Sherbrooke, Canada

Hua-Ting Yao – PhD 2021 (X+McGill)

Local Decomposition in RNA Structural Design

Now postdoc at Univ. of Vienna, Austria

Ha Ngoc Nguyen – PhD 2020

Combining machine learning and reference-free transcriptome analysis for the identification of prostate cancer signatures

Now Lecturer at Thuy Loi University, Vietnam

Jorgelindo Da Veiga Moreira – PhD 2019

Modélisation de la bascule métabolique chez les cellules eucaryotes: application à la production de citrate chez la levure Yarrowia lipolytica

Now postdoc at Polytechnique Montreal, Canada

Juraj Michalik – PhD 2019

Non-redundant sampling in RNA Bioinformatics

Now postdoc at Czech Academy of Sciences, Czech Republic

Afaf Saaidi – Phd 2018

Multi-dimensional probing for RNA secondary structure(s) prediction

Now consultant at Capgemini Engineering, France

Wei Wang – PhD 2017

Practical structure-sequence alignment of pseudoknotted RNAs

Now R&D researcher at Merck Shanghai, China

Alice Héliou – PhD 2017

Analyse des séquences génomiques : identification des ARNs circulaires et calcul de l’information négative

Now data scientist at Thalès, France

Amélie Héliou – PhD 2017

Molecular conformations and game theory

Now senior ML engineer at Google Paris, France

Vladimir Reinharz – PhD 2016

Algorithmic properties of evolved structured RNAs

Now Associate Prof at UQAM, Montreal, Canada

• Ievgeniia Furletova – Lecturer@IMPB, Russia
• Adrien Guilhot-Gaudeffroy – R&D@Thales
• Daria Iakovishina – CEO/founder@Ksivalue.com, Russia
• Vincent Le Gallic – R&D engineer@Telecom Paris Tech
• Pauline/Maria Pommeret
• Antoine Soulé – Postdoc@University McGill, Canada

Former visiting Scientists

• Cédric Chauve – Simon Fraser University, Canada
• Peter Clote – Boston College, USA
• Robert Giegerich – Univ. Bielefeld, Germany
• Vsevolod Makeev – Vavilov Institute of General Genetics, Russian Academy of Science
• Laurent Mouchard – University of Rouen
• Laurent Schwarz – APHP