Members

Faculty members

Yann Ponty

CNRS Researcher (DR)

Sebastian Will

Full Prof. at Ecole Polytechnique

Sarah J. Berkemer

Asst Prof. at Ecole Polytechnique

Jean-Marc Steyaert

Full Prof. (aemeritus) at Ecole Polytechnique

Administrative Assistant

Karem Witt Martínez

PhD Students

Taher Yacoub

Fragment-based docking for ssRNA-protein complexes

Co-supervised with Fabrice Leclerc (I2BC@Univ. Paris Saclay)

Alan Azede

RNA structurome dynamics in staphylococcus aureus

Co-supervised with Philippe Bouloc (I2BC@Univ. Paris Saclay)

Théo Boury

Parameterized complexity for RNA design and kinetics

Co-supervised with Laurent Bulteau (LIGM@Univ. Gustave Eiffel)

Nan Pan

Algorithms for the Integrative Modeling
of Viral RNA Architectures

Alumni

Former faculty members and staff

Mireille Régnier

Inria Research Director (DR) – AMIBio founder and former lead (2009/16)

Now director of Inria Lille Nord-Europe research center

Philippe Chassignet

Prof. at Ecole Polytechnique

Evelyne Rayssac

Former AMIBio administrator

Ecole Polytechnique

Julie Bernauer – Former Inria Researcher (CR) – Now at nVidia, USA

Former postdoctoral fellows

  • Olga Berillo – Research associate@ Lady Davis Institute, Canada
  • Rasmus Fonseca – R&D developper@zoox.com
  • Loic Paulevé – CNRS Researcher@LABRI, Bordeaux
  • Balaji Raman – Associate professor@IIIT Sri City, India
  • Christelle Rovetta – Data Scientist@Fujitsu France
  • Saad Sheikh – Tech lead@Facebook, USA

Former PhD candidates

Bertrand Marchand – PhD 2023

Exact parameterized algorithmics for structural RNA bioinformatics

Now postdoc at Univ. Sherbrooke, Canada

Hua-Ting Yao – PhD 2021 (X+McGill)

Local Decomposition in RNA Structural Design

Now postdoc at Univ. of Vienna, Austria

Ha Ngoc Nguyen – PhD 2020

Combining machine learning and reference-free transcriptome analysis for the identification of prostate cancer signatures

Now Lecturer at Thuy Loi University, Vietnam

Jorgelindo Da Veiga Moreira – PhD 2019

Modélisation de la bascule métabolique chez les cellules eucaryotes: application à la production de citrate chez la levure Yarrowia lipolytica

Now postdoc at Polytechnique Montreal, Canada

Juraj Michalik – PhD 2019

Non-redundant sampling in RNA Bioinformatics

Now postdoc at Czech Academy of Sciences, Czech Republic

Afaf Saaidi – Phd 2018

Multi-dimensional probing for RNA secondary structure(s) prediction

Now consultant at Capgemini Engineering, France

Wei Wang – PhD 2017

Practical structure-sequence alignment of pseudoknotted RNAs

Now R&D researcher at Merck Shanghai, China

Alice Héliou – PhD 2017

Analyse des séquences génomiques : identification des ARNs circulaires et calcul de l’information négative

Now data scientist at Thalès, France

Amélie Héliou – PhD 2017

Molecular conformations and game theory

Now senior ML engineer at Google Paris, France

Vladimir Reinharz – PhD 2016

Algorithmic properties of evolved structured RNAs

Now Associate Prof at UQAM, Montreal, Canada

  • Ievgeniia Furletova – Lecturer@IMPB, Russia
  • Adrien Guilhot-Gaudeffroy – R&D@Thales
  • Daria Iakovishina – CEO/founder@Ksivalue.com, Russia
  • Vincent Le Gallic – R&D engineer@Telecom Paris Tech
  • Pauline/Maria Pommeret
  • Antoine Soulé – Postdoc@University McGill, Canada

Former visiting Scientists

  • Cédric Chauve – Simon Fraser University, Canada
  • Peter Clote – Boston College, USA
  • Robert Giegerich – Univ. Bielefeld, Germany
  • Vsevolod Makeev – Vavilov Institute of General Genetics, Russian Academy of Science
  • Laurent Mouchard – University of Rouen
  • Laurent Schwarz – APHP