infrared.rna.StackEnergy Class Reference

Constrain nucleotides to be in the same complementarity class. More...

Inheritance diagram for infrared.rna.StackEnergy:

Collaboration diagram for infrared.rna.StackEnergy:

Additional Inherited Members
Public Member Functions inherited from infrared.infrared.WeightedFunction
	__init__ (self, variables)
	value (self)
	vars (self)
Protected Attributes inherited from infrared.infrared.WeightedFunction
	_vars
	_weight
Properties inherited from infrared.infrared.WeightedFunction
	weight = property

Detailed Description

Constrain nucleotides to be in the same complementarity class.

SameComplClassConstraint(i,j)

The constraint is satisfied if values at positions (i,j) are from the same complenentarity class, i.e. either both in {A,G} or both in {C,U}.

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The documentation for this class was generated from the following file:

• src/infrared/rna.py