infrared.rna.DifferentComplClassConstraint Class Reference

Parse RNA structure including pseudoknots. More...

Inheritance diagram for infrared.rna.DifferentComplClassConstraint:

Collaboration diagram for infrared.rna.DifferentComplClassConstraint:

Detailed Description

Parse RNA structure including pseudoknots.

Parameters

structure	dot bracket string of RNA structure
opening	specifies the recognized opening bracket symbols
closing	specifies closing bracket symbols (corresponding to opening)

Returns

array bps encoding the structure like bps[i]=j for each bp {i,j}

Notes

Characters not in opening or closing are considered unpaired.

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The documentation for this class was generated from the following file:

• src/infrared/rna.py