infrared.rna.BPEnergy Class Reference

Function for Stack Energy model. More...

Inheritance diagram for infrared.rna.BPEnergy:

Collaboration diagram for infrared.rna.BPEnergy:

Additional Inherited Members
Public Member Functions inherited from infrared.infrared.WeightedFunction
	__init__ (self, variables)
	value (self)
	vars (self)
Protected Attributes inherited from infrared.infrared.WeightedFunction
	_vars
	_weight
Properties inherited from infrared.infrared.WeightedFunction
	weight = property

Detailed Description

Function for Stack Energy model.

StackEnergy is an Infrared Function to capture Stack Energy model for a base pair stack (i, j, i+1, j-1).

bps = parse(target)
stackFunctions = [StackEnergy(i,j) for (i,j) in bps if (i+1,j-1) in bps]

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The documentation for this class was generated from the following file:

• src/infrared/rna.py