| ▼Ninfrared | Package infrared |
| ▼Ninfrared | |
| CArcticClusterTree | Cluster tree for maximization (in arctic semiring) |
| CArcticEvaluationAlgebra | Maximization algebra for optimization |
| CArcticFunctionAdapter | Adapt function for maximization algebra |
| CArcticOptimizer | Maximizing optimizer (based on arctic algebra) |
| CBoltzmannSampler | Boltzmann sampler |
| CClusterTreeBase | Cluster tree base class |
| CConsistencyError | |
| CConstraintFunctionDefinitionError | |
| CEngineBase | Abstract base class for samplers and optimizers |
| CEvaluationAlgebra | Algebra for evaluating a constraint network |
| CFeature | Feature in multi-dimensional Boltzmann sampling |
| CFeatureStatistics | Keeping statistics on features |
| CModel | |
| CMultiDimensionalBoltzmannSampler | Multi-dimensional Boltzmann sampler |
| CPFClusterTree | Cluster tree for partition function calculation and sampling |
| CPFEvaluationAlgebra | Partition function algebra for sampling |
| CPFFunctionAdapter | Adapt function for partition function algebra |
| CValueIn | Constrain variable to have a value from a specified set |
| CWeightedFunction | Function of a constraint network |
| ▼Nlibinfrared | The libinfrared module exposing C++ infrared functionality to Python |
| CAssignment | An assignment (of values to variables) |
| CConstraint | A constraint |
| CFiniteDomain | A finite domain of a variable |
| CFunction | A real valued feature function |
| CIntFunction | An integer valued feature function |
| ▼Nrna | |
| CBPComp | Constrain complementarity of the base pair (i,j) |
| CBPEnergy | Function for Stack Energy model |
| CDifferentComplClassConstraint | Parse RNA structure including pseudoknots |
| CGCCont | Function for (basepair-wise) BasePair Energy model |
| CNotBPComp | Function for (position-wise) GC content |
| CParseError | |
| CSameComplClassConstraint | Constrain nucleotides to be in different complementarity classes |
| CStackEnergy | Constrain nucleotides to be in the same complementarity class |
| ▼Nired | |
| ▼Ngraph | |
| ▼Cadjacency_list | Graph in adjacency list representation |
| Cedge_t | |
| ▼CArcticEvaluationPolicy | Evaluation Strategy for Optimization (max/+); defining the arctic semiring |
| Cselector | |
| CAssignment | A (partial) assignment of variables to values |
| CAssignmentIterator | Iterate over the assignments of a subset of variables |
| CCluster | Cluster (or bag) in the cluster tree |
| ▼CClusterTree | A tree of clusters (=variables, functions, constraints) |
| Cedge_info_t | Information at an edge of the tree |
| Cvertex_info_t | Information at a vertex (=cluster/bag) of the tree |
| Ccontainer_selector | Switching containers in MaterializedFuntion |
| Ccontainer_selector< FunValue, mapS > | Class implementing the specializations to enable instantiation of sparse materialized function classes |
| Ccontainer_selector< FunValue, simple_mapS > | Class implementing the specializations to enable space saving instantiation of sparse materialized function classes using the specialized 'map' implementation simple_map |
| Ccontainer_selector< FunValue, vecS > | Class implementing the specializations to enable instantiation of non-sparse materialized function classes |
| CDependency | Dependencies specify a dependency between variables |
| CFeatureNetwork | Feature network |
| CFiniteDomain | |
| CFunction | Functions evaluate assignments of a subset of variables |
| CmapS | Map selector class |
| CMaterializedFunction | A materialized function |
| ▼CPFEvaluationPolicy | The evaluation policy to calculate partition functions |
| Cselector | |
| Csimple_mapS | Simple map selector class |
| CSimpleMap | Space saving replacement for map |
| CStdEvaluationPolicy | Define PFEvaluationPolicy as standard |
| CStdEvaluationPolicy< bool > | The evaluation policy to combine constraint values. Here, mul corresponds to &&, plus to ||, one to true, and zero to false |
| CvecS | Vector selector class |
| Cvector_nbv_sel | |
| Cvector_nbv_sel< bool > | |
1.9.7