About me
Position: PhD Student in AMIBio team
Institution: Laboratoire
d’informatique de l’École Polytechnique (LIX)
OrcID: 0009-0004-0553-4789
Office:
2013, Bâtiment Alan Turing, 1 rue Estienne d’Orves, 91120 Palaiseau,
FranceTopics of interests
RNA and DNA bioinformatics
Discrete algorithms
Complexity
Machine Learning
Publications
Preprints
Independent set reconfiguration: general and RNA-focused
parameterized algorithms
Théo Boury; Laurent Bulteau; Bertrand
Marchand; Yann Ponty
Preprint on HAL
paper
2023
Automatic Exploration of the Natural Variability of RNA
Non-Canonical Geometric Patterns with a Parameterized Sampling
Technique
Théo Boury; Yann Ponty; Vladimir
Reinharz
In 23rd International Workshop on Algorithms in Bioinformatics (WABI
2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume
273, pp. 20:1-20:22, Schloss Dagstuhl - Leibniz-Zentrum für Informatik
(2023)
paper - 
code - 
doi - 
slides
Presentations
2023
Simulation of Ancient DNA Sequences Using Transformer-based
Techniques
Théo Boury; Jazeps Medina-Tretmanis; Maria
Avila-Arcos; Emilia Huerta-Sanchez; Burak Yelmen; Flora Jay
Talk at the Junior Conference on Data Science and Engineering ,
Paris-Saclay
abstract -
slides
Research experience
Interdisciplinary Laboratory of Digital Sciences (LISN),
Gif-sur-Yvette, France
Internship in Population Genetics – Supervisors: Flora Jay, Burak Yelmen
March 2023- August 2023
Combinatorial and Mathematical Computer Science Laboratory
(LaCIM), Montréal, Canada
Internship in Structural Bioinformatics – Supervisor: Vladimir Reinharz
October 2022- February 2023
Laboratoire d’Informatique de l’École polytechnique (LIX),
Palaiseau, France
Internship in Algorithmic Bioinformatics – Supervisors: Yann Ponty, Laurent Bulteau, Bertrand
Marchand
March 2022- August 2022
Research Institute in Computer Science (IRIT), Toulouse,
France
Internship in Network – Supervisors: Daniel
Hagimont, Brice Ekane
April 2021- August 2021
Lille Research Center in Computer Science, Signal and
Automatics (CRIStAL), Lille, France
Internship in Sequence Bioinformatics – Supervisor: Hélène Touzet
June 2020- July 2020
Education
École Normale Supérieure de Lyon
MSc in Computer Science, end of BSc and
school diploma.
2019-2023
Lycée Henri Poincaré de Nancy
Classe Préparatoire Maths and Physics. BSc 1
and 2.
2016-2019