Published/accepted work

1. Marchand, B., Will, S., Berkemer, S., Bulteau, L., & Ponty, Y. (2022). Automated design of dynamic programming schemes for RNA folding with pseudoknots. WABI 2022.

   @article{marchand2022automated,
     title = {Automated design of dynamic programming schemes for RNA folding with pseudoknots},
     author = {Marchand, Bertrand and Will, Sebastian and Berkemer, Sarah and Bulteau, Laurent and Ponty, Yann},
     year = {2022},
     preprint = {https://pastel.archives-ouvertes.fr/LIX/hal-03676377v1},
     code = {https://gitlab.inria.fr/bmarchan/auto-dp},
     group = {published},
     journal = {WABI 2022}
   }
   

2. Bulteau, L., Marchand, B., & Ponty, Y. (2021). A new parametrization for independent set reconfiguration and applications to RNA kinetics. IPEC 2021.

   @article{bulteau2021new,
     title = {A new parametrization for independent set reconfiguration and applications to RNA kinetics.},
     author = {Bulteau, Laurent and Marchand, Bertrand and Ponty, Yann},
     year = {2021},
     preprint = {https://hal.inria.fr/hal-03272963/document},
     group = {published},
     link = {https://drops.dagstuhl.de/opus/volltexte/2021/15394/pdf/LIPIcs-IPEC-2021-11.pdf},
     code = {https://gitlab.inria.fr/amibio/barriers},
     journal = {IPEC 2021}
   }
   

3. Marchand, B., Ponty, Y., & Bulteau, L. (2021). Tree Diet: Reducing the Treewidth to Unlock FPT Algorithms in RNA Bioinformatics. WABI 2021.

   @article{marchand2021tree,
     title = {Tree Diet: Reducing the Treewidth to Unlock FPT Algorithms in RNA Bioinformatics},
     author = {Marchand, Bertrand and Ponty, Yann and Bulteau, Laurent},
     year = {2021},
     preprint = {https://hal.inria.fr/hal-03206132/document},
     link = {https://drops.dagstuhl.de/opus/volltexte/2021/14360/pdf/LIPIcs-WABI-2021-7.pdf},
     long = {https://almob.biomedcentral.com/articles/10.1186/s13015-022-00213-z},
     code = {https://gitlab.inria.fr/amibio/tree-diet},
     group = {published},
     journal = {WABI 2021}
   }
   

4. Serret, M. F., Marchand, B., & Ayral, T. (2020). Solving optimization problems with Rydberg analog quantum computers: Realistic requirements for quantum advantage using noisy simulation and classical benchmarks. Physical Review A, 102(5), 052617.

   @article{serret2020solving,
     title = {Solving optimization problems with Rydberg analog quantum computers: Realistic requirements for quantum advantage using noisy simulation and classical benchmarks},
     author = {Serret, Michel Fabrice and Marchand, Bertrand and Ayral, Thomas},
     journal = {Physical Review A},
     volume = {102},
     number = {5},
     pages = {052617},
     year = {2020},
     group = {published},
     preprint = {https://arxiv.org/pdf/2006.11190.pdf},
     link = {https://journals.aps.org/pra/abstract/10.1103/PhysRevA.102.052617},
     publisher = {APS}
   }