Publications


2005:
  • P. Clote, J. Waldispühl, B. Behzadi and J.-M. Steyaert,
    Energy landscape of k-point mutants of an RNA molecule,
    9 pages, à paraître dans Bioinformatics
  • B. Behzadi and F. Lefessant,
    DNA Compression Challenge Revisited,
    To appear in CPM 2005 proceedings
  • J. Waldispühl and J.-M. Steyaert,
    Modeling and Predicting all-alpha transmembrane proteins including helix-helix pairing [abstract] [bibtex-entry]
    TCS, special issue on Pattern Discovery in the Post Genome

2004:
  • B. Behzadi and J.-M. Steyaert,
    On The Transformation Distance Problem, [abstract]
    Proc. SPIRE 2004, 2004
  • B. Behzadi and J.-M. Steyaert,
    The Minisatellite Transformation Problem Revisited: A Run-Length Encoded Approach, [abstract]
    Proc. of WABI 2004, 2004

2003:
    Proc. PSC'03, 2003
  • B. Behzadi and J.-M. Steyaert,
    An Improved Algorithm for generalized comparison of minisatellites, [abstract] [bibtex-entry]
    Proc. CPM 2003, Lecture Notes in Computer Science Vol. 2676, pp 32-41, 2003
  • Pierre Nicodème,
    q-gram analysis and urn models, [abstract] [bibtex-entry]
    Proc. of Discrete Random Walks 2003, pages 243--258, 2003
  • Pierre Nicodème,
    Regexpcount, a symbolic package for counting problems on regular expressions and words, [abstract] [bibtex-entry]
    Fundamenta Informaticae, vol. 56, num. 1-2, pages 71-88, 2003
  • Wertz X., Schoevaert D., Maitournam H., Chassignet P. and Schwartz L.
    The effect of hormones on bone growth is mediated through mechanical stresses, [abstract]

2002 et avant :
  • J. Waldispühl, B. Behzadi and J.-M. Steyaert,
    An Approximate Matching Algorithm for Finding (Sub-)Optimal Sequences in S-attributed Grammars, [abstract] [bibtex-entry]
    Proc. ECCB 2002, Bioinformatics Vol. 18, no. 90002, pp 250-259, © OXFORD University Press, 2002
  • P. Nicodeme, J.-M. Steyaert,
    Selecting optimal oligonucleotide primers for multiplex PCR, [abstract] [bibtex-entry]
    Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology, pp 210-213, 1997
  • F. Lefebvre,
    A Grammar-Based Unification of Several Alignment and Folding Algorithms, [abstract] [bibtex-entry]
    Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, pp 143-154, © AAAI press, 1996
  • F. Lefebvre,
    An optimized parsing algorithm well-suited to RNA folding, [abstract] [bibtex-entry]
    Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, pp 222-230, © AAAI press, 1995


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