Activities:
July 5-7, 2006: Paper Presentation at CPM 2006, Barcelona, Spain.
"Reconstructing Domain Compositions of Ancestral Multidomain Proteins"
June 28-29, 2006: Google Code Jam Programming Contest, World Final, Dublin, Ireland.
"Google Code Jam World Finals"
April 27, 2006: Oral Presentation at Automatic Group Meeting, MPI, Berlin, Germany.
"Graph Algorithms for anyone and forever"
April 9-13, 2006: ACM ICPC Programming contest, World Finals, San Antonio, Texas.
"ACM ICPC World Finals 2006"
February 7, 2006: Invited Lecturer, Computer Science dept., Freie University, Berlin, Germany.
"Gene duplications and Reconciliation Trees"
January 19, 2006: Oral Presentation at Automatic Group Meeting, MPI, Berlin, Germany.
"The Macro-Evolutionary Phlogeny Problem"
December 12-14, 2005: Oral Presentation at Workshop 2005 of the Lix, Ecole Polytechnique, France.
"Efficient Algorithms for Comparison of Minisatellite Sequences"
November 19-20, 2005: SWERC'05 programming contest, Ecole Polytechnique, France.
"South-Western European Regional ACM programming Contest 2005"
July 13, 2005: Phd Thesis Defense, Ecole Polytechnique, France.
"Comparing Sequence Evolutionary Structures Efficiently: A Dynamic Programming Approach"
June 19-22, 2005: Paper Presentation at CPM 2005, Jeju Island, Korea.
"DNA Compression Challenge Revisited: A Dynamic Programming Approach"
May 2005: Oral Presentation at Institue Pasteur, Paris.
"Efficient Algorithms for Comparing sequences with Tandem Repeats"
May 2005: Oral Presentation at Max Planck Institute for Molecular Genetics, Berlin, Germany.
"Efficient Algorithms for Comparison of Minisatellites"
November 20-21, 2004: SWERC'04 programming contest, Ecole Polytechnique, France.
"South Western European Regional ACM Programming Contest 2004"
October 5-8, 2004: Paper Presentation at SPIRE 2004, Padova, Italy.
"On The Transformation Distance Problem"
September 17-21, 2004: Paper Presentation at WABI 2004, Bergen, Norway.
"The Minisatellite Transformation Problem Revisited: A Run-Length Encoded Approach"
January-March, 2004: Internship at Institute for Systems Biology
(ISB), Seattle, USA.
"Tandem Mass Spectrometry Data Analysis"
November 20-21, 2003: Oral Presentation at Meeting on Sequence
Algorithms. Montpellier, CNRS.
"Transformation Distance Problem"
November 15-16, 2003: SWERC'03 Programming Contest, Ecole Polytechnique, France.
"South-Western European Regional ACM Programming Contest"
September 22-24, 2003: Paper Presentation at PSC2003, Prague.
"Transformation Distance Problem Revisited"
June 25-27, 2003: Paper Presentation at 14th Annual Symposium,
CPM 2003, Morelia, Mexico.
"An Improved Algorithm for
Generalized Comparison of Minisatellites"
May 13, 2003: Poster Presentation at BBC 2003, with JMS and
JW. Leuven, Belgium
"can
RNA Super-Optimal Structures improve the secondary structure
prediction ?"
March 6, 2003: Oral Presentation at Bioinformatic seminar. LRI
"AMSAG Algorithm as a prediction tool for RNA secondary structures"
January 20-21, 2003: Oral Presentation at Meeting on Sequence
Algorithms. Nancy, LORIA
" An Improved Algorithm for
comparison of minisatellites"
December 13, 2002: Oral Presentation at 1st LIX Bioinformatic Workshop.
" A
new algorithm for prediction of RNA secondary structures"
October 6-9, 2002: Paper Presentation at ECCB2002. Saarbruken,
Germany.
"An Approximate
Matching Algorithm for Finding (Sub-)Optimal Sequences in S-Attributed
Grammars"
June 24-26, 2002: Oral Presentation at RNA Secondary
Structures Conference, Dijon, France
" Modeling RNA Seocondary
Structures by S-Attributed Grammars"